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1

Brain-machine interface: Instant neural control of a movement signal

Serruya, Mijail D., Hatsopoulos, Nicholas G., Paninski, Liam, Fellows, Matthew R., Donoghue, John P.

Journal:

Year:

2002

Language:

english

File:

PDF, 85 KB

english, 2002

2

Estimation of Entropy and Mutual Information

Journal:

Neural Computation

Year:

2003

Language:

english

File:

PDF, 846 KB

english, 2003

3

Fast Kalman filtering on quasilinear dendritic trees

Journal:

Journal of Computational Neuroscience

Year:

2010

Language:

english

File:

PDF, 1.30 MB

english, 2010

4

Maximum likelihood estimation of cascade point-process neural encoding models

Journal:

Network Computation in Neural Systems

Year:

2004

Language:

english

File:

PDF, 484 KB

english, 2004

5

The central amygdala controls learning in the lateral amygdala

Yu, Kai, Ahrens, Sandra, Zhang, Xian, Schiff, Hillary, Ramakrishnan, Charu, Fenno, Lief, Deisseroth, Karl, Zhao, Fei, Luo, Min-Hua, Gong, Ling, He, Miao, Zhou, Pengcheng, Paninski, Liam, Li, Bo

Journal:

Nature Neuroscience

Year:

2017

Language:

english

File:

PDF, 2.76 MB

english, 2017

6

Anxiety Cells in a Hippocampal-Hypothalamic Circuit

Jimenez, Jessica C., Su, Katy, Goldberg, Alexander R., Luna, Victor M., Biane, Jeremy S., Ordek, Gokhan, Zhou, Pengcheng, Ong, Samantha K., Wright, Matthew A., Zweifel, Larry, Paninski, Liam, Hen, Ren

Journal:

Year:

2018

Language:

english

File:

PDF, 4.96 MB

english, 2018

7

Neuronal Dynamics (From Single Neurons to Networks and Models of Cognition) || Nonlinear integrate-and-fire models

Gerstner, Wulfram, Kistler, Werner M., Naud, Richard, Paninski, Liam

Year:

2014

Language:

english

File:

PDF, 915 KB

english, 2014

8

Localized semi-nonnegative matrix factorization (LocaNMF) of widefield calcium imaging data

Saxena, Shreya, Kinsella, Ian, Musall, Simon, Kim, Sharon H., Meszaros, Jozsef, Thibodeaux, David N., Kim, Carla, Cunningham, John, Hillman, Elizabeth M. C., Churchland, Anne, Paninski, Liam, Macke, J

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 25.99 MB

2020

9

Creep strength of centrifugally cast Al-rich TiAl alloys

D. Sturm, M. Heilmaier, H. Saage, M. Paninski, G.J. Schmitz, A. Drevermann, M. Palm, F. Stein, N. Engberding, K. Kelm, S. Irsen

Journal:

Materials Science and Engineering: A

Year:

2009

Language:

english

File:

PDF, 886 KB

english, 2009

10

Population decoding of motor cortical activity using a generalized linear model with hidden states

Vernon Lawhern, Wei Wu, Nicholas Hatsopoulos, Liam Paninski

Journal:

Journal of Neuroscience Methods

Year:

2010

Language:

english

File:

PDF, 849 KB

english, 2010

11

Kalman filter mixture model for spike sorting of non-stationary data

Ana Calabrese, Liam Paninski

Journal:

Journal of Neuroscience Methods

Year:

2011

Language:

english

File:

PDF, 1.13 MB

english, 2011

12

Sequential movement representations based on correlated neuronal activity

Nicholas G. Hatsopoulos, Liam Paninski, John P. Donoghue

Journal:

Experimental Brain Research

Year:

2003

Language:

english

File:

PDF, 450 KB

english, 2003

13

Robustness of neuroprosthetic decoding algorithms

Mijail Serruya, Nicholas Hatsopoulos, Matthew Fellows, Liam Paninski, John Donoghue

Journal:

Biological Cybernetics

Year:

2003

Language:

english

File:

PDF, 401 KB

english, 2003

14

The most likely voltage path and large deviations approximations for integrate-and-fire neurons

Journal:

Journal of Computational Neuroscience

Year:

2006

Language:

english

File:

PDF, 596 KB

english, 2006

15

Integral equation methods for computing likelihoods and their derivatives in the stochastic integrate-and-fire model

Liam Paninski, Adrian Haith, Gabor Szirtes

Journal:

Journal of Computational Neuroscience

Year:

2008

Language:

english

File:

PDF, 365 KB

english, 2008

16

Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models

Shinsuke Koyama, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2010

Language:

english

File:

PDF, 686 KB

english, 2010

17

A new look at state-space models for neural data

Liam Paninski, Yashar Ahmadian, Daniel Gil Ferreira, Shinsuke Koyama, Kamiar Rahnama Rad, Michael Vidne, Joshua Vogelstein, Wei Wu

Journal:

Journal of Computational Neuroscience

Year:

2010

Language:

english

File:

PDF, 782 KB

english, 2010

18

Automating the design of informative sequences of sensory stimuli

Jeremy Lewi, David M. Schneider, Sarah M. N. Woolley, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

19

Spatio-temporal correlations and visual signalling in a complete neuronal population

Pillow, Jonathan W., Shlens, Jonathon, Paninski, Liam, Sher, Alexander, Litke, Alan M., Chichilnisky, E. J., Simoncelli, Eero P.

Journal:

Year:

2008

Language:

english

File:

PDF, 1.64 MB

english, 2008

20

Modeling the impact of common noise inputs on the network activity of retinal ganglion cells

Michael Vidne, Yashar Ahmadian, Jonathon Shlens, Jonathan W. Pillow, Jayant Kulkarni, Alan M. Litke, E. J. Chichilnisky, Eero Simoncelli, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2012

Language:

english

File:

PDF, 5.50 MB

english, 2012

21

Optimal experimental design for sampling voltage on dendritic trees in the low-SNR regime

Jonathan Hunter Huggins, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2012

Language:

english

File:

PDF, 1.03 MB

english, 2012

22

Inferring synaptic inputs given a noisy voltage trace via sequential Monte Carlo methods

Liam Paninski, Michael Vidne, Brian DePasquale, Daniel Gil Ferreira

Journal:

Journal of Computational Neuroscience

Year:

2012

Language:

english

File:

PDF, 2.07 MB

english, 2012

23

Comparing integrate-and-fire models estimated using intracellular and extracellular data

Liam Paninski, Jonathan Pillow, Eero Simoncelli

Journal:

Year:

2005

Language:

english

File:

PDF, 603 KB

english, 2005

24

Stochastic optimal control and the human oculomotor system

Liam Paninski, Michael J Hawken

Journal:

Year:

2001

Language:

english

File:

PDF, 229 KB

english, 2001

25

Noise-driven adaptation: in vitro and mathematical analysis

Liam Paninski, Brian Lau, Alex Reyes

Journal:

Year:

2003

Language:

english

File:

PDF, 324 KB

english, 2003

26

Statistical encoding model for a primary motor cortical brain-machine interface

Shoham, S., Paninski, L.M., Fellows, M.R., Hatsopoulos, N.G., Donoghue, J.P., Normann, R.A.

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2005

Language:

english

File:

PDF, 851 KB

english, 2005

27

EMG Prediction From Motor Cortical Recordings via a Nonnegative Point-Process Filter

Nazarpour, K., Ethier, C., Paninski, L., Rebesco, J.M., Miall, R.C., Miller, L.E.

Journal:

IEEE Transactions on Biomedical Engineering

Year:

2012

Language:

english

File:

PDF, 723 KB

english, 2012

28

Estimating entropy on m bins given fewer than m samples

Journal:

IEEE Transactions on Information Theory

Year:

2004

Language:

english

File:

PDF, 180 KB

english, 2004

29

Undersmoothed Kernel Entropy Estimators

Paninski, L., Yajima, M.

Journal:

IEEE Transactions on Information Theory

Year:

2008

Language:

english

File:

PDF, 254 KB

english, 2008

30

A Coincidence-Based Test for Uniformity Given Very Sparsely Sampled Discrete Data

Journal:

IEEE Transactions on Information Theory

Year:

2008

Language:

english

File:

PDF, 299 KB

english, 2008

31

Neural Decoding of Hand Motion Using a Linear State-Space Model With Hidden States

Wei Wu, Kulkarni, J.E., Hatsopoulos, N.G., Paninski, L.

Journal:

IEEE Transactions on Neural Systems and Rehabilitation Engineering

Year:

2009

Language:

english

File:

PDF, 572 KB

english, 2009

32

The relationship between optimal and biologically plausible decoding of stimulus velocity in the retina

Paninski, Liam, Lalor, Edmund C., Ahmadian, Yashar

Journal:

Journal of the Optical Society of America A

Year:

2009

Language:

english

File:

PDF, 520 KB

english, 2009

33

Mean-Field Approximations for Coupled Populations of Generalized Linear Model Spiking Neurons with Markov Refractoriness

Toyoizumi, Taro, Rad, Kamiar Rahnama, Paninski, Liam

Journal:

Neural Computation

Year:

2009

Language:

english

File:

PDF, 436 KB

english, 2009

34

[IEEE 2012 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - San Diego, CA (2012.8.28-2012.9.1)] 2012 Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Decoding arm and hand movements across layers of the macaque frontal cortices

Wong, Y. T., Vigeral, M., Putrino, D., Pfau, D., Merel, J., Paninski, L., Pesaran, B.

Year:

2012

Language:

english

File:

PDF, 871 KB

english, 2012

35

Temporal Precision in the Visual Pathway through the Interplay of Excitation and Stimulus-Driven Suppression

Butts, D. A., Weng, C., Jin, J., Alonso, J.-M., Paninski, L.

Journal:

Journal of Neuroscience

Year:

2011

Language:

english

File:

PDF, 2.16 MB

english, 2011

36

A Bayesian compressed-sensing approach for reconstructing neural connectivity from subsampled anatomical data

Yuriy Mishchenko, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2012

Language:

english

File:

PDF, 733 KB

english, 2012

37

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

Vogelstein, Joshua T., Watson, Brendon O., Packer, Adam M., Yuste, Rafael, Jedynak, Bruno, Paninski, Liam

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 888 KB

english, 2009

38

State-Space Decoding of Goal-Directed Movements

Kulkarni, J.E., Paninski, L.

Journal:

IEEE Signal Processing Magazine

Year:

2008

Language:

english

File:

PDF, 749 KB

english, 2008

39

ICD Oversensing Caused by TASER

PANINSKI, ROBERT J., MARSHALL, MELANIE E., LINK, MARK S.

Journal:

Journal of Cardiovascular Electrophysiology

Year:

2013

Language:

english

File:

PDF, 494 KB

english, 2013

40

Imaging Action Potentials with Calcium Indicators

Yuste, R., MacLean, J., Vogelstein, J., Paninski, L.

Journal:

Cold Spring Harbor Protocols

Year:

2011

Language:

english

File:

PDF, 241 KB

english, 2011

41

Fast inference in generalized linear models via expected log-likelihoods

Alexandro D. Ramirez, Liam Paninski

Journal:

Journal of Computational Neuroscience

Year:

2014

Language:

english

File:

PDF, 913 KB

english, 2014

42

Fast state-space methods for inferring dendritic synaptic connectivity

Pakman, Ari, Huggins, Jonathan, Smith, Carl, Paninski, Liam

Journal:

Journal of Computational Neuroscience

Year:

2014

Language:

english

File:

PDF, 2.59 MB

english, 2014

43

An Extremal Problem on v-Partite Graphs

Nešetřil, J., Paninski, R., Sachs, H.

Journal:

European Journal of Combinatorics

Year:

1983

Language:

english

File:

PDF, 479 KB

english, 1983

44

Information about Movement Direction Obtained from Synchronous Activity of Motor Cortical Neurons

Nicholas G. Hatsopoulos, Catherine L. Ojakangas, Liam Paninski and John P. Donoghue

Journal:

Proceedings of the National Academy of Sciences

Year:

1998

Language:

english

File:

PDF, 1.72 MB

english, 1998

45

Spatiotemporal receptive fields of barrel cortex revealed by reverse correlation of synaptic input

Ramirez, Alejandro, Pnevmatikakis, Eftychios A, Merel, Josh, Paninski, Liam, Miller, Kenneth D, Bruno, Randy M

Journal:

Nature Neuroscience

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

46

Inferring input nonlinearities in neural encoding models

Ahrens, Misha B., Paninski, Liam, Sahani, Maneesh

Journal:

Network Computation in Neural Systems

Year:

2008

Language:

english

File:

PDF, 460 KB

english, 2008

47

Efficient methods for sampling spike trains in networks of coupled neurons

Mishchenko, Yuriy, Paninski, Liam

Journal:

The Annals of Applied Statistics

Year:

2011

Language:

english

File:

PDF, 607 KB

english, 2011

48

Bayesian Image Recovery for Dendritic Structures Under Low Signal-to-Noise Conditions

G. Fudenberg, L. Paninski

Journal:

IEEE Transactions on Image Processing

Year:

2009

Language:

english

File:

PDF, 1.83 MB

english, 2009

49

[IEEE 2013 Asilomar Conference on Signals, Systems and Computers - Pacific Grove, CA, USA (2013.11.3-2013.11.6)] 2013 Asilomar Conference on Signals, Systems and Computers - Bayesian spike inference from calcium imaging data

Pnevmatikakis, Eftychios A., Merel, Josh, Pakman, Ari, Paninski, Liam

Year:

2013

Language:

english

File:

PDF, 226 KB

english, 2013

50

Fast Kalman Filtering and ForwardâBackward Smoothing via a Low-Rank Perturbative Approach

Pnevmatikakis, Eftychios A., Rad, Kamiar Rahnama, Huggins, Jonathan, Paninski, Liam

Journal:

Journal of Computational and Graphical Statistics

Year:

2014

Language:

english

File:

PDF, 616 KB

english, 2014

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